Optical Cancer Imaging Lab

Screening, Diagnosis, and Therapy with Light

Tag: publications

  • New publication on near-infrared OCT phantoms of the small airways

    Eric Brace, a PhD student in our group has a new publication in SPIE’s Journal of Biomedical Optics.

    Developing new imaging devices is challenging – you might not always be able to get sample tissue to test their performance. Optical tissue ‘phantoms’ are artificial duplicates which mimic the way light interacts with tissue, acting as a test-bench for early device prototyping. 

    Eric developed methods to produce easy to fabricate, repeatable, 3D phantoms which mimic the small airways of the lung and surrounding parenchyma. He tailored the optical properties of these phantoms to work at the near-infrared wavelengths  of our OCT systems (1310 ± 50nm). This is an important consideration as many phantoms in literature are produced for applications using visible light. 

    The phantoms are produced filling a 3D printed mold with an agar-intralipid solution which solidifies into a gel upon cooling. Malignancies can be simulated by attaching different concentrations of the agar-intralipid solution onto the 3D printed lumen to appear as embedded lesions. As some intralipid comes out of suspension, this produces textures similar to the alveoli visualized in the small airways of the lungs. 

  • New publication on endoscopic oral OCT segmentation with deep learning

    New publication on endoscopic oral OCT segmentation with deep learning

    Congratulations to Chloe, a recent Masters student in our lab for her first publication in MDPI Cancers.

    OCT produces a large amount of 3-dimensional data which is hard to quantify manually. This study presents a neural network pipeline to simplify OCT interpretation by providing information about epithelial depth and stratification through simple en face maps. The pipeline’s predictions demonstrate as-good-as or better agreement than inter-rater agreement, suggesting strong predictive power.

    Grade 2 dysplasia of the lateral tongue, with an epithelial depth heatmap in (b).
    Contralateral image of the lateral tongue, with an epithelial depth heatmap in (b).