New publication on OCT biomarkers of oral dysplasia and carcinoma

Jeanie, a PhD student in our lab has a new publication in MDPI Cancers.

Oral cancers are associated with high mortality in advanced stages. Early diagnosis is associated with better patient outcomes, but this is challenging to achieve as benign lesions look similar to lesions of concern, and multiple biopsies may be required to ensure the most pathologic tissue is sampled. 

Optical coherence tomography is a noninvasive imaging technique that provides three-dimensional visualization of subsurface tissue structures. We have previously developed an OCT endoscope which can reach most sites in the oral cavity – but assessing large three-dimensional volumes for the features most relevant to oral cancer is challenging.

This work leverages the work of Chloe, a recent Masters student in our lab, who developed a deep learning segmentation tool to rapidly detect the tissue surface and bottom of the epithelium in oral OCT. From these segmentations, we measure seven imaging biomarkers and assess their utility in distinguishing oral pre-cancers and cancers.

Sample imaging of severe dysplasia

New publication on endoscopic oral OCT segmentation with deep learning

Congratulations to Chloe, a recent Masters student in our lab for her first publication in MDPI Cancers.

OCT produces a large amount of 3-dimensional data which is hard to quantify manually. This study presents a neural network pipeline to simplify OCT interpretation by providing information about epithelial depth and stratification through simple en face maps. The pipeline’s predictions demonstrate as-good-as or better agreement than inter-rater agreement, suggesting strong predictive power.

Grade 2 dysplasia of the lateral tongue, with an epithelial depth heatmap in (b).
Contralateral image of the lateral tongue, with an epithelial depth heatmap in (b).

Double-Clad Fiber article in BioPhotonics

Castor Optics has published a new article on multimodal optical coherence tomography using double-clad fiber in BioPhotonics, citing one of our previous publications. Multimodal OCT often uses double-clad fiber couplers from Castor Optics.

In vivo OCT and autofluorescence imaging (AFI) of human peripheral airways using a double-clad fiber (DCF) coupler. AFI of an airway (a), magnified AFI region (b), and OCT cross sections corresponding to the dashed lines (c-e). 

SPIE Photonics West 2024

Left to right: Eric, Kimiya, Jeanie, Alicia, and Adrian

OCIL trainees presented work at SPIE Photonics West 2024 in San Francisco, California. You can read more about their presentations here:

Multipath artifacts enable angular contrast in multimodal endoscopic optical coherence tomography

Congratulations to Adrian and Jeanie on their new publication in Optics Express.

This work quantifies and suggests that there is utility in multipath artifacts found in double-clad fiber based OCT systems. While these artifacts appear as a smear in the A-line direction, they can be projected into a high-quality (and unique) en face image when compared to the fundamental mode image.

The angular dependence of the fundamental image and higher order image generated by the multipath artifact lays the basis for multipath contrast, a ratiometric measurement of differential coupling which provides information regarding the angular diversity of a sample. ultipath contrast images can be generated from OCT data where multipath artifacts are present, meaning that a wealth of clinical data can be retrospectively examined.